PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99505

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 207aa MW: 22661.8 Da PI: 5.2973

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99505	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.5e-43	54	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r+da++s+vyeA+ar+rdPvyG++gvi + q+q+++l+ae a++++e OIS99505 54 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRTDAVNSMVYEANARIRDPVYGCAGVICQFQKQISELQAEFAKAQAE 153 7***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MECSDNKTTI SSLSAGSMKS PNNVSATTKS SGLISPRSIL SAPPSPPSPV ILTPCAACKI 60 LRRRCVDKCV LAPYFPPTDP LKFTIAHRVF GASNIIKMLQ ELPEEQRTDA VNSMVYEANA 120 RIRDPVYGCA GVICQFQKQI SELQAEFAKA QAEILNLKCQ NSNLLALVCM EVSEYQENSS 180 SSNDYGNNTS LFLEDNSVYA AWEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-73	LBD family protein

Link Out ? help Back to Top
Ensembl	OIS99505