PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99647

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 334aa MW: 37317.3 Da PI: 8.8847

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99647	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.6e-06	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C k+F+++ L +H H OIS99647 188 YQCGICRKMFKTSQALGSHKTIH 210 9******************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MEKHKCKLCS RKFLNGKALG GHMRSHLMAL PLPPKTPPLK QDSGGGRSHS TLSLYSSENQ 60 EDEVLEQKGD DSLGNYGLRE NPKRSFRMID PEFLDGGYVV QDRESETEST KKPTCRRSNR 120 SRKMVLTMAT TEKSEEKMKE KSVDFEPLSL FSDSSSEEDI AMCLMMLSKD VWKSSAPSKL 180 RSKHGKKYQC GICRKMFKTS QALGSHKTIH KIKNSNSSTS IEESEQKPTK KLVSVKNIMD 240 QKLHECPFCG KLFQSGQALG GHKRSHLIMS SSTTGSSSIK LGDSFLVEYS NSAKLPNGFI 300 DLNMPAPMED EDFSQPDFSA ISDAEFQHQE NGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	2e-32	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS99647