PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99648

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 438aa MW: 49360.1 Da PI: 6.4614

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99648	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C++ Fs+ L H+r+H OIS99648 16 HYCRVCKRGFSSAGALGGHMRSH 38 68********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MVDNSEKNET ISSVVHYCRV CKRGFSSAGA LGGHMRSHGV GDTNRNYGED ISEQRFMINN 60 NFRRDNNKQE GQKHSYNLRA NSNRLFGNRA SEDPDRKSSM WPPNDRGKYV IDETLTLSPV 120 SSPGSSDVER NVQLYNAKSE YYGHDKDQYD SREEEEDEDL ANCLVMLSNK SYDLSDNSKE 180 AKNKAKEVEK GLFQCKACKK IFNSHQALGG HRASHKKVKG CYATKLDDNN NNNNDTDIDE 240 DSISPTDLIL HQESNSFQSH SPSSSGSFSR KRSRVHQCSI CHRVFSSGQA LGGHKRCHWL 300 TSSLPETTFI PTFQEIQYHN QEQLFNKPIF TNSDQPLDLN FPAQLGNAAE VGQNLHNPFE 360 HEGPRSYLQL WTDQEVDTNN LNLSLNQKSK VSTEDLSREE NYKAKEAKLS NLKDVNLDGG 420 SSWLQVGIGP TPDIVATL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MVDNSEKNET ISSVVHYCRV CKRGFSSAGA LGGHMRSHGV GDTNRNYGED ISEQRFMINN  60
NFRRDNNKQE GQKHSYNLRA NSNRLFGNRA SEDPDRKSSM WPPNDRGKYV IDETLTLSPV  120
SSPGSSDVER NVQLYNAKSE YYGHDKDQYD SREEEEDEDL ANCLVMLSNK SYDLSDNSKE  180
AKNKAKEVEK GLFQCKACKK IFNSHQALGG HRASHKKVKG CYATKLDDNN NNNNDTDIDE  240
DSISPTDLIL HQESNSFQSH SPSSSGSFSR KRSRVHQCSI CHRVFSSGQA LGGHKRCHWL  300
TSSLPETTFI PTFQEIQYHN QEQLFNKPIF TNSDQPLDLN FPAQLGNAAE VGQNLHNPFE  360
HEGPRSYLQL WTDQEVDTNN LNLSLNQKSK VSTEDLSREE NYKAKEAKLS NLKDVNLDGG  420
SSWLQVGIGP TPDIVATL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	7e-24	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS99648