PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99712
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 184aa    MW: 20927.2 Da    PI: 10.1754
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99712genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.5e-4250126177
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
               +Cq+e+C+adls+a++yhrrhkvCe h+ka+vv+v+gl+qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++
  OIS99712  50 CCQAEKCSADLSDARQYHRRHKVCEYHAKAQVVVVAGLRQRFCQQCSRFHELTEFDESKRSCRRRLAGHNERRRKSS 126
               6**************************************************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
METAGHHNIS TSEDDYKKKR GSCNNNITTN NNHIKKGSIN NGGSSTTQRC CQAEKCSADL  60
SDARQYHRRH KVCEYHAKAQ VVVVAGLRQR FCQQCSRFHE LTEFDESKRS CRRRLAGHNE  120
RRRKSSLPSA ADQSQIAETG SSRKGTVQLN NKDINNMMCG QVNDRGRIQI SIQENSTFKN  180
FHLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.12e-46SBP family protein