PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99892

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 224aa MW: 25710 Da PI: 4.3349

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99892	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113	2e-35	11	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 aCaaCk++r+kC ++C lapyfp++++++f+nv +lFG++n +kll+++ ++++e+++++l+ eA+++ ++PvyG++g+ +kl+ ++e ++el+++++++ OIS99892 11 ACAACKHQRKKCDENCQLAPYFPSNRSEDFQNVYRLFGVNNTIKLLNSVADDQKEKTAETLILEAKVWKENPVYGCLGIERKLRVEIEAYEKELEMVRKQI 111 7***********************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MNADMLMFVG ACAACKHQRK KCDENCQLAP YFPSNRSEDF QNVYRLFGVN NTIKLLNSVA 60 DDQKEKTAET LILEAKVWKE NPVYGCLGIE RKLRVEIEAY EKELEMVRKQ ISFCKEMATL 120 QMQRQQLEEQ LDQSSLALVS PFDVPYHDKK NEAIFMSDTK NFYGYKYDST NLDEVANVEC 180 IAIQDADFDH PAFVEPESAR VDEFKGCEIE AISITGEEEI ADLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	9e-28	LBD family protein

Link Out ? help Back to Top
Ensembl	OIS99892