PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99907

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 309aa MW: 34656.6 Da PI: 6.5889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99907	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.6	1.3e-35	21	132	2	66
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+dLqd+LG+d++sk+++WL+++ak ai+ l+++ OIS99907 21 TGRKDRHSKVYTAKGPRDRRVRLSALTAIQFYDLQDRLGYDRPSKAVDWLIKKAKNAIDNLAELppcnpnehginkmpisieadvdsrgiialesqplmds 121 79**************************************************************8877777777766666666665555555555444333 PP TCP 66 ..........s 66 OIS99907 122 ssrflfqrqlA 132 33333322221 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MKRAMEREIE QVEGGRILRS TGRKDRHSKV YTAKGPRDRR VRLSALTAIQ FYDLQDRLGY 60 DRPSKAVDWL IKKAKNAIDN LAELPPCNPN EHGINKMPIS IEADVDSRGI IALESQPLMD 120 SSSRFLFQRQ LAEDPSSSSS HVMQALEPET SSVADTSKSF FPMNSGTTLM NFLSFPHEAM 180 SRDSIQNEDL GLSLHTNLHD QNSNHSTNLV NFEANYNPRM ANWIIPHQQF LSQGGIFSQR 240 EPLQSNFSQL ISHAWELQQP MASAEHKSSI SNSNFNGDFQ FPGRLIQGEE DINGVICIKP 300 SSGSSSSQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	3e-48	TCP family protein

Link Out ? help Back to Top
Ensembl	OIS99907