PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00016
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19752.4 Da    PI: 9.0225
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00016genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.2e-171560146
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
              k+ie++  r+ tfskRr g+ KKA+EL  LCd+++ +++fs+t+k 
  OIT00016 15 KKIESEDDRYATFSKRRSGLYKKASELVKLCDVDIGIVLFSPTDKP 60
              68****************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MEGKKTRGRQ KIPMKKIESE DDRYATFSKR RSGLYKKASE LVKLCDVDIG IVLFSPTDKP  60
FSFFHPTAEA IIDRFFNPNT QLSESNRLVA AHARNKVDQL NNRREVFDNI KEITSAHALL  120
LDKMKESGQK YWWESIEQFN ADEVTKFEDW LSTSIFNMNN RLKQLENEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-30M-type_MADS family protein