PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00169
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23719.8 Da    PI: 8.0639
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00169genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.14.6e-23959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k+ien++ rq t+skR+  i KKA+EL vLCd++va+++fs+tg+l  yss
  OIT00169  9 KKIENSTSRQQTYSKRKDSIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 59
              68***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGRNKLVMKK IENSTSRQQT YSKRKDSIVK KANELAVLCD TDVALLMFSP TGQLTSYSSR  60
GSVEDIMLRV VNRPGELHRR PIPNEQHFSQ RLTQLKYESE MVEKIAIAEA HEEKLNKLNQ  120
RLSEARENIR YYEPQVEYIN SVHEAVACQQ FLMGAMGRIQ QVKAKLLGGE VLQRNENVEM  180
ASVTTDDTAA AANGSSSSNP NWNSVRDESC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.28e-30MIKC_MADS family protein