PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00352
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 435aa    MW: 49327.3 Da    PI: 5.174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00352genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.78.3e-96434231373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshltaN 99 
               l++lLl+cA+a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++  +     +++  ++ + +++++l  ++++ P+++f++ + N
  OIT00352  43 LEKLLLHCANALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPTATNNYLYGSSN-LDQRRLMSVTELagYVDLIPWHRFGYCASN 142
               5799***************************************************888887766554444.33455555555577**************** PP

      GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....vakrledlelee 193
               +aI++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi +     s+    + + ee+g rLa+fA+  +vpfef+++    +   l++l++++
  OIT00352 143 SAIYKAIEGHTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPCWRPSVppfLNVSSEEVGLRLANFAKFRDVPFEFHMIedlnYDMLLSQLSPST 243
               **********************************************955434445789999***********************9665333367788**** PP

      GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
               L+++ +Eal+Vn++  l +++de+ + +s   rd +L+ vk+l+P +++vv++++d++++s+  r++ +++y +  fd+le+ lp++s++r  +E+  +g 
  OIT00352 244 LQLRDDEALVVNCQNWLRYMPDEQIKGSSisSRDIFLDRVKDLNPCIMTVVDEDSDLGNSSLKSRLATCFNYLWIPFDALETFLPKDSRQRLDYEAD-IGH 343
               ***********************987666669*****************************************************************.*** PP

      GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               +i+n++  eg++r+er e  +k ++r+e++GF +vp+ e++ k++k+ll +++  g+ +++e++ lvl+Wk+++ v ++aW
  OIT00352 344 KIENIIGFEGFQRIERLECCNKFSQRMENSGFMSVPFCEETIKEVKSLLDEHA-SGWGMKNEDDMLVLTWKGHNSVYATAW 423
               *****************************************************.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MKAELRGNST TIPIQNPNLF NNPQNSLTGA LKGCIGSLDG ACLEKLLLHC ANALENNDVT  60
LAQQVMWVLN NLASSNGDPN QRLTSWFLRA LISRASRVCP TATNNYLYGS SNLDQRRLMS  120
VTELAGYVDL IPWHRFGYCA SNSAIYKAIE GHTKVHILDF SITHCMQWPT LIDAIAKRPE  180
GPPSLRISVP CWRPSVPPFL NVSSEEVGLR LANFAKFRDV PFEFHMIEDL NYDMLLSQLS  240
PSTLQLRDDE ALVVNCQNWL RYMPDEQIKG SSISSRDIFL DRVKDLNPCI MTVVDEDSDL  300
GNSSLKSRLA TCFNYLWIPF DALETFLPKD SRQRLDYEAD IGHKIENIIG FEGFQRIERL  360
ECCNKFSQRM ENSGFMSVPF CEETIKEVKS LLDEHASGWG MKNEDDMLVL TWKGHNSVYA  420
TAWVLVPPQM DMRIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-126GRAS family protein