PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00364
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 185aa    MW: 21481.2 Da    PI: 7.9448
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00364genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-181871457
              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
              + ++++eq++ Le+ F +++++  e++ +LAk+lg++ rq+++W+qNrRa++k+
  OIT00364 18 KKRLNQEQIKLLESSFDSTKKLEPEKKLQLAKELGVPPRQISIWYQNRRARWKN 71
              56799***********************************************95 PP
2HD-ZIP_I/II104.96.4e-3417108293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl++eq+klLE+sF++++kLepe+K +la+eLg+ prq+ +W+qnrRAR+k+++lE dy+aL+ ++++  +e+ +Leke+e+Lr el++
     OIT00364  17 NKKRLNQEQIKLLESSFDSTKKLEPEKKLQLAKELGVPPRQISIWYQNRRARWKNQNLEIDYNALQLKLETALSEKLQLEKETERLRGELQK 108
                  79*************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MNSHNLQKYQ SSLPNHNKKR LNQEQIKLLE SSFDSTKKLE PEKKLQLAKE LGVPPRQISI  60
WYQNRRARWK NQNLEIDYNA LQLKLETALS EKLQLEKETE RLRGELQKAN QMLIAVNGER  120
AINIPLCDVS LSSCCEERGS SSFQEDVISY STTWVHTREA NNLQFNELYA LIGLEEGSNN  180
CRSTW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.19e-31HD-ZIP family protein