PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00391

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 485aa MW: 55144.6 Da PI: 6.0357

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00391	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	176	222	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++vkq+G+++W+ Ia+ m gR +kqc++rw+++l OIT00391 176 KGQWTEEEDRKLVKLVKQFGMRRWAQIAENMV-GRAGKQCRERWHNHL 222 799***************************.***********97 PP
2	Myb_DNA-binding	56.2	7.8e-18	228	270	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE++ lv+a+kq G++ W+ Ia++++ gRt++ +k++w+ OIT00391 228 KDTWSEEEELMLVEAHKQIGNK-WAEIAKRIP-GRTENAIKNHWN 270 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MANFSKPREE PKEVSFFHKE IFLTLNSVHF PLITYISSSM EGGGGDGSAY QPFQNVPNNL 60 PIFQQGPPLT AINRFLWSHQ SQFSSQHNES VYPHQRGGFY DFSSYSDSAS GSSSHEKVFS 120 WTSFPEPGIF FNEQNSVGWN NQENGIADEM ISSEKNSKET GKKAKEGTSS TTVVVKGQWT 180 EEEDRKLVKL VKQFGMRRWA QIAENMVGRA GKQCRERWHN HLRPDIKKDT WSEEEELMLV 240 EAHKQIGNKW AEIAKRIPGR TENAIKNHWN ATKRRQNSRR NKLKKQEKDG PNESKYRSNI 300 LQDYIRSKYF SDDSSLTTTM TPMTNATPPY SDDDSPSLLT SQTYDEEMNF MQNLFGRNSL 360 MENNGKVLDN NSSSSSYGFN SFGFNYSKND NQTDNGQDGS NLYLEPNMYM ADDQSYNCSD 420 LYLSYLLDRT STSAATSLPY SGGFPYGNMM MNQGSSSSGG NNEVDLMEMV SSPFYPQKTS 480 NNTFF

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MANFSKPREE PKEVSFFHKE IFLTLNSVHF PLITYISSSM EGGGGDGSAY QPFQNVPNNL  60
PIFQQGPPLT AINRFLWSHQ SQFSSQHNES VYPHQRGGFY DFSSYSDSAS GSSSHEKVFS  120
WTSFPEPGIF FNEQNSVGWN NQENGIADEM ISSEKNSKET GKKAKEGTSS TTVVVKGQWT  180
EEEDRKLVKL VKQFGMRRWA QIAENMVGRA GKQCRERWHN HLRPDIKKDT WSEEEELMLV  240
EAHKQIGNKW AEIAKRIPGR TENAIKNHWN ATKRRQNSRR NKLKKQEKDG PNESKYRSNI  300
LQDYIRSKYF SDDSSLTTTM TPMTNATPPY SDDDSPSLLT SQTYDEEMNF MQNLFGRNSL  360
MENNGKVLDN NSSSSSYGFN SFGFNYSKND NQTDNGQDGS NLYLEPNMYM ADDQSYNCSD  420
LYLSYLLDRT STSAATSLPY SGGFPYGNMM MNQGSSSSGG NNEVDLMEMV SSPFYPQKTS  480
NNTFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT00391