PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00459

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 350aa MW: 39432.6 Da PI: 6.3404

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00459	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++ ++G g+W++ ++ g++R++k+c++rw +yl OIT00459 14 KGPWTPEEDQKLIDYIDKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.2	1.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l OIT00459 67 RGKFSEEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLIDYID KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRS DLFASLPNII ALANLLQHHP LEDHAIRVQA EAAQLAKLQY LQFLFQSSSA 180 SNNYPISTSS NTQYNLGDFG TFNLSNSIKE STTPSLNLSH LENQTLFSNE NSDSQLLQNQ 240 DISLTFPDSQ QVPFNFQTHL NNNNNINTSD INGHNFNYDQ GNDSTSTPLN NINLPSPASS 300 TRLPPLTEIS ISNNNQGDSS STSTNAAEGI TSSYNWPELF LEEHFMHEIS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRSPCCDEN GLKKGPWTPE EDQKLIDYID KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRS DLFASLPNII ALANLLQHHP LEDHAIRVQA EAAQLAKLQY LQFLFQSSSA  180
SNNYPISTSS NTQYNLGDFG TFNLSNSIKE STTPSLNLSH LENQTLFSNE NSDSQLLQNQ  240
DISLTFPDSQ QVPFNFQTHL NNNNNINTSD INGHNFNYDQ GNDSTSTPLN NINLPSPASS  300
TRLPPLTEIS ISNNNQGDSS STSTNAAEGI TSSYNWPELF LEEHFMHEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-109	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT00459