PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00483
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 243aa    MW: 26857.2 Da    PI: 8.2063
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00483genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20136170135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  OIT00483 136 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 170
               ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MNSCSSTYCH GGHCTCGMFY NQNNSSTTSA AYSMLYNQYQ TTPYEENYSD QNTYSFASST  60
SSNSVDCTLS LGTPSTRLST SNDNNEKRLQ SNERRSNSYM SKCWNILQPK NHKSSRGSSN  120
GNTNSGGADP LVARRCANCD TTSTPLWRNG PRGPKSLCNA CGIRFKKEER RANAAAATAN  180
GGGMDHTQHM INGGSWVHHS QAQKMPSYSS AAYGNHEFRF IEDDDRDSDN SIPFWPFMAS  240
QRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-39GATA family protein