PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00525
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 182aa    MW: 20299.7 Da    PI: 5.3586
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00525genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1811.1e-5619114297
     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
               reqdrflPianvsrimkk+lPanakiskdake+vqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+y+eplk+yl+++r+leg+k
  OIT00525  19 REQDRFLPIANVSRIMKKALPANAKISKDAKEIVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYIEPLKIYLQRFRDLEGQK 114
               89*******************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MADSDNESGG QRESESSLRE QDRFLPIANV SRIMKKALPA NAKISKDAKE IVQECVSEFI  60
SFITGEASDK CQREKRKTIN GDDLLWAMTT LGFEEYIEPL KIYLQRFRDL EGQKSTMAGI  120
QDKENSGSVN MGSSYVEDYG MMMMGQHHQG HAYGTGVYNQ TARNDAGIGN TGSRFPDVGR  180
PR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-74NF-YB family protein