PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT00885
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 284aa    MW: 32541.2 Da    PI: 7.7712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT00885genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE + + da +++ ++    W  +a++++ g+t ++++  ++ 
         OIT00885 28 KWTAEENKMFEDALALFDKDtpdKWYNVAAMIP-GKTVNDVIKQYRE 73
                     8********************************.********99986 PP
2Myb_DNA-binding46.31e-14137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
         OIT00885 137 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 181
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MNREMGYLSP ATYIKNSSWL FEENKVTKWT AEENKMFEDA LALFDKDTPD KWYNVAAMIP  60
GKTVNDVIKQ YRELVEDISD IEAGLIPVPG YTTSNSFTLE WVNNQDGFHG FKQFYAQNGK  120
RGTSNRSSEH ERKKGVPWTE EEHRQFLLGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK  180
YFIRQLSGGK DKRRSSIHDI TVVNLSESKS TSPDNHSQQQ QHHSMVKTLC DYNSPNQESD  240
LTFNSSTGDL ITTPFRGVSS YGLEHGMHNI TLQTLQFGNY NTMC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-114MYB family protein