PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00917

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

E2F/DP

Protein Properties

Length: 378aa MW: 41709.1 Da PI: 6.354

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00917	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	77.4	1.4e-24	118	183	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+kf++ll+++e+g ++ln+ a+ L +v +RRiYDi+NVLe+++liek+ k++i wkg OIT00917 118 RFDNSLGLLTKKFISLLQEAEDGSLDLNHSADVL---KV--AKRRIYDITNVLEGIGLIEKTTKSRICWKG 183 6799****************************...88..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MSTAGENVDL NLNLNLSLAP LHLMSQICSE SRPVARNLFA SSTFVSAPNN GTEKSKDDNC 60 GYGVCKRTGA ANHSPLGQAA RARAKKSSKG KASRDAISAA TGINADLLDN LNLGGSYRFD 120 NSLGLLTKKF ISLLQEAEDG SLDLNHSADV LKVAKRRIYD ITNVLEGIGL IEKTTKSRIC 180 WKGFPSTRSR GLHDQVSRLK GEIEYLNAED WRLDNCIREK LEQIRTVESD VNCQKSLLLT 240 EEDIMSLPHF RDKTVIAIKA PDASLIEVPD PCEDLGFPEK QYRLVLRSTT GPIDLFLLSK 300 QGWKHEDITI KHTKQLDALT ADEKMDDAYL SSVPPCSLDS TTSKLSGVHK IVPSHASIDD 360 DYWLRSEQEV SATDLWGH

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MSTAGENVDL NLNLNLSLAP LHLMSQICSE SRPVARNLFA SSTFVSAPNN GTEKSKDDNC  60
GYGVCKRTGA ANHSPLGQAA RARAKKSSKG KASRDAISAA TGINADLLDN LNLGGSYRFD  120
NSLGLLTKKF ISLLQEAEDG SLDLNHSADV LKVAKRRIYD ITNVLEGIGL IEKTTKSRIC  180
WKGFPSTRSR GLHDQVSRLK GEIEYLNAED WRLDNCIREK LEQIRTVESD VNCQKSLLLT  240
EEDIMSLPHF RDKTVIAIKA PDASLIEVPD PCEDLGFPEK QYRLVLRSTT GPIDLFLLSK  300
QGWKHEDITI KHTKQLDALT ADEKMDDAYL SSVPPCSLDS TTSKLSGVHK IVPSHASIDD  360
DYWLRSEQEV SATDLWGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	157	LKVAKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.1	2e-80	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OIT00917