PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01228

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 254aa MW: 27979.6 Da PI: 6.519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01228	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	61	107	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN + +Lr l+P K++Ka+ L k++ +Ik+L OIT01228 61 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVISHIKDL 107 58***********************6.....5**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MEFFNSCNGF CEDYGFQGMI ANGSTSSSSL ILDNERGELV KAMVRPGEKG VNPEKALIAL 60 KNHSEAERRR RERINGHLGT LRNLIPGTNK MDKAALLAKV ISHIKDLRVN AAEATKGVLV 120 PTDIDEVCVE QQAEGSGRAT YSVKASLCCE YKHELISDLR QALDTLPLKT VRAEIATLGN 180 RMVSVFVITE GDEGNTEDNE RCQLLVTSVR QALRSVLDKF YASEEFSSRS TLSSKRQRVS 240 LLDSSSSSSL GDFW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-32	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT01228