PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01338
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 247aa    MW: 27930.4 Da    PI: 5.8493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01338genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-1859109256
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr++  + +Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  OIT01338  59 IYRGVRRRN-NDKWVCELREPSK---QKRIWLGTYPTPEMAARAHDVAALALRGN 109
               69****887.8*********964...5*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MANINSISCS LDSNHSQETL SSSSERSSAA PDEGIILLAS SRPKKRAGRK KFKETRHPIY  60
RGVRRRNNDK WVCELREPSK QKRIWLGTYP TPEMAARAHD VAALALRGNS ATLNFADSLW  120
RLPVIVSKDP KDLRQAAVKA AEAFRQDPEL VGFDYMNEEV NSNEEVKCQE NVVNGSGNDM  180
GVKEVKMKNM EMENILCCNW GEDSEESWQK KMAEGLLFSP TPRLGNCFSW DDVEISDVEV  240
SLWNYNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-46ERF family protein