PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01420
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 189aa    MW: 21033.8 Da    PI: 5.4108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01420genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.8e-07165184221
               EETTTTEEESSHHHHHHHHH CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                C++Cgk F+r  nL+ H+r
  OIT01420 165 FCTICGKGFKRDANLQMHMR 184
               6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MSFLEQKIHQ LQELVHIIVD HKSLVGIQGN DLSIQQQQLI TADLTSIIVQ LISTAGSLFP  60
TVKHHTLSST SPTTKQHAQL GVVSVPSGKD INVGALPHSI NVTKVEDQPN QVDLMGDHGI  120
EQKHDVDEHE AKDDDEFHEE ENLPPSSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLQ  180
MHMRVMGMS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.25e-59C2H2 family protein