PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01429
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 718aa    MW: 79137.8 Da    PI: 6.7072
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01429genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-192778556
              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +++t++q+++Le++F+++++p++++r +L++ lgL  rq+k+WFqNrR++ k
  OIT01429 27 HRHTAHQIQRLEAVFKECPHPDEKSRLQLSRDLGLAPRQIKFWFQNRRTQLK 78
              689*********************************************9987 PP
2START169.62.1e-532244492206
               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               +a  a++el+++ + +ep+W+ks     + ++ d + q+f+++++       ++ea+r+sgvv+m+   lv+ ++d + +W e ++    ka t+evis g
  OIT01429 224 IAGNAMEELIRLLQTNEPLWTKSTtdgrDVLDLDSYNQIFPRANSslknsnVRVEASRDSGVVIMNGLALVNMFMDAN-KWVEFFPtivsKARTIEVISCG 323
               67899********************99999***********9999****999**************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwll 181
                     ++lqlm+ e+q+lsplvp R + f+R+++q  +g+w+ivdvS d  q+++  ss+ ++++lpSg+li++++ng+skvtwv hv+++++   h l+
  OIT01429 324 vmggqsSTLQLMYEEMQVLSPLVPtRQSFFLRFCQQIDQGSWAIVDVSYDIIQENQYPSSSCKVHRLPSGCLIQDMPNGYSKVTWVVHVEVEEKGLlHKLY 424
               **************************************************9999988999********************************99888**** PP

               HHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 182 rslvksglaegaktwvatlqrqcek 206
                 l++sg+a+ga +w+  lqr+ce+
  OIT01429 425 SDLIHSGMAFGAERWLGSLQRLCER 449
               ***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    
MEYGGVTSSS GGGGDASETH RKKKRFHRHT AHQIQRLEAV FKECPHPDEK SRLQLSRDLG  60
LAPRQIKFWF QNRRTQLKSQ HERADNCALR AENDRIRCEN IAIREAIKNV ICPSCGGPPV  120
TEDSYFDEQK LRMENMQLKE ELDKISSIAA KYIGRPISQL PPVQPIHLSS LNLMSMSSFG  180
GIGLTGPSLD LDLLPGSSTS STIPSLPFPT LNISDMDKSL MADIAGNAME ELIRLLQTNE  240
PLWTKSTTDG RDVLDLDSYN QIFPRANSSL KNSNVRVEAS RDSGVVIMNG LALVNMFMDA  300
NKWVEFFPTI VSKARTIEVI SCGVMGGQSS TLQLMYEEMQ VLSPLVPTRQ SFFLRFCQQI  360
DQGSWAIVDV SYDIIQENQY PSSSCKVHRL PSGCLIQDMP NGYSKVTWVV HVEVEEKGLL  420
HKLYSDLIHS GMAFGAERWL GSLQRLCERY ACLMVSGKSS RELGGVIPSP EGKKSMMKLA  480
QRMVSNFCAS INPSNGHQWN NISGLDEFEV RATLQKSTDP GQPNGVIISA ASTIWLPLPS  540
QHVFNFLRDE RTRPQWDVLS NQNPVQEVAH IANGSHPGNC ISVLRAYNTS QNNMLILQES  600
CIDSSGSLVI YSPVDLPSIN VAMSGEDTTY IPLLPSGFTI SPDGRQGQRS NEASCSSTNN  660
GTMGDNRSEG SLVTVVFQIL VSSLSSSAKM SPESVNTVNN LIGNTIHQIK AALNCSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein