PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01440
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26863.2 Da    PI: 9.4034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01440genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-2067119456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               + ++t+eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  OIT01440  67 KKRLTSEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 119
               5679************************************************9 PP
2HD-ZIP_I/II120.31e-3866157293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ lke
     OIT01440  66 KKKRLTSEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKSKQLERLYDSLKQDYDLVSREKQKLQNEVLALRAILKE 157
                  9**************************************************************************************88875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MDWNGNFRPF VSRPTPPDNS FNFLYSYNYD QYPGMEMKHA MQTQNGGVLP TMDKLNNNFA  60
MNQLDKKKRL TSEQLESLEN SFQEEIKLDP DRKMKLAKEL GLQPRQIAVW FQNRRARWKS  120
KQLERLYDSL KQDYDLVSRE KQKLQNEVLA LRAILKEQAT KKQVNSTVYT KISGEETVES  180
TSMPSSNKTR GITTSNHQNN NNNNDMAECS YVFNVNNVEG FNPVMPPYWV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16695KKKRLTSEQLESLENSFQEEIKLDPDRKMK
2114122RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-60HD-ZIP family protein