PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01445

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 478aa MW: 55055 Da PI: 6.398

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01445	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.4	9.3e-24	111	218	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ OIT01445 111 KWTDNMVRLLIMVVYYIGDEVGSEVnnnnndtnnskkkgggsvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQ 211 7*************777777753223446677788999999999********************************************559**** PP trihelix 80 pyfdqle 86 +++ ++ OIT01445 212 NLLETMD 218 9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDSGSIYSNI GPGMLGLEMS LHHQIPQQNP HHMQQQQQHP THLQPPPPPH PIVSYGHQET 60 ENQQQQQQSL RQGLPFGNKA KNQSLTFSDE DDNNSVEDGK RNKTCPWQRM KWTDNMVRLL 120 IMVVYYIGDE VGSEVNNNNN DTNNSKKKGG GSVGVLQKKG KWKSVSRAMM ERGFYVSPQQ 180 CEDKFNDLNK RYKRVNDILG KGTACRVVEN QNLLETMDQL TQKLKEEVKK LLNSKHLFFR 240 EMCAYHNSCG HNNTSTGGGS GNVQLSTEVA VEANTQTQKR CLHSSENARI EVHLEEGTKM 300 AKGKSADDDQ DEDEEDEDED EEEDDDEEVS GARGRHEHHH NHVNEYDDDM DERSRKRQRN 360 SGSLSPMVQQ LSSELANVIQ DGGRSSVEKR QWLKTRMVQL EEQHVGYLCQ AFELQKQRLK 420 WEKFTSKKER EMEKEKLINE RKKLENERMV LLLRKKELEL LDFHQNHNRN GDPSSVTG

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDSGSIYSNI GPGMLGLEMS LHHQIPQQNP HHMQQQQQHP THLQPPPPPH PIVSYGHQET  60
ENQQQQQQSL RQGLPFGNKA KNQSLTFSDE DDNNSVEDGK RNKTCPWQRM KWTDNMVRLL  120
IMVVYYIGDE VGSEVNNNNN DTNNSKKKGG GSVGVLQKKG KWKSVSRAMM ERGFYVSPQQ  180
CEDKFNDLNK RYKRVNDILG KGTACRVVEN QNLLETMDQL TQKLKEEVKK LLNSKHLFFR  240
EMCAYHNSCG HNNTSTGGGS GNVQLSTEVA VEANTQTQKR CLHSSENARI EVHLEEGTKM  300
AKGKSADDDQ DEDEEDEDED EEEDDDEEVS GARGRHEHHH NHVNEYDDDM DERSRKRQRN  360
SGSLSPMVQQ LSSELANVIQ DGGRSSVEKR QWLKTRMVQL EEQHVGYLCQ AFELQKQRLK  420
WEKFTSKKER EMEKEKLINE RKKLENERMV LLLRKKELEL LDFHQNHNRN GDPSSVTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-88	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT01445