PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01473
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 148aa    MW: 16474.6 Da    PI: 4.2275
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01473genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.93.3e-2472130260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                   Fl+k++++++d++l+ +isw ++g+sfvv+d+ ef++ +Lpk Fkh+nf+SFvRQLn+Y
      OIT01473  72 FLSKTFDLVDDSSLDLIISWGSKGESFVVWDPVEFSRMILPKNFKHNNFSSFVRQLNTY 130
                   9********************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MNPFDKNPIS QPPGSESDTL PPHSITMDPE FAVYSEPPTS PFINLESFSA GEEGLGVVQP  60
MECLHGTQIP PFLSKTFDLV DDSSLDLIIS WGSKGESFVV WDPVEFSRMI LPKNFKHNNF  120
SSFVRQLNTY VGITLAQSQE YLAHVLLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-25HSF family protein