PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01677

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 427aa MW: 46846.9 Da PI: 8.5057

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01677	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.5	6.4e-10	42	67	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rt C++G++C+F+H+p OIT01677 42 GEPDCSYYIRTSLCRFGSTCRFNHPP 67 6899********************97 PP
2	zf-CCCH	37.7	3.4e-12	90	112	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCk+G++CkF+H++ OIT01677 90 ECQYYLKTGTCKFGATCKFHHPR 112 7********************96 PP
3	zf-CCCH	34.3	4.1e-11	135	158	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ OIT01677 135 NECTYYMRTAQCKFGSTCKFHHPE 158 68********************96 PP
4	zf-CCCH	36.5	8.1e-12	289	313	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG Ck+G+ C+F+H++ OIT01677 289 QPDCQFYMKTGDCKFGAVCRFHHPR 313 789********************96 PP
5	zf-CCCH	37.3	4.6e-12	333	359	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ OIT01677 333 PGEPMCIFYSRYGICKFGPSCKFDHPM 359 57899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MDISVSEGPP SLSPSLHQDS LWQMNLRSME SMESGPYPVR EGEPDCSYYI RTSLCRFGST 60 CRFNHPPNRK LALAAASING EYPERIGQLE CQYYLKTGTC KFGATCKFHH PRNKAGIAGR 120 VTLNVLGYPL RPNENECTYY MRTAQCKFGS TCKFHHPEPS NMMVSSRGST VYPPGPSPTT 180 PGQMPYPLSR ASFISGARWQ GSSSYAPLPM LQGVVSFPGF TYNGQLGSVS SAEGQQQTAG 240 NNQVYGSSRS SDKPTMGSEG MNSSYRASSL PVGYYALQGE NVFPERVGQP DCQFYMKTGD 300 CKFGAVCRFH HPRERLLPPP DCLLSPIGLP LRPGEPMCIF YSRYGICKFG PSCKFDHPMR 360 VFTYNISASS STDDPSVRRL LGSSSGTGAL TLTSEGIVEA TSTTPRRLSL SETRKMPPGD 420 NNFEREG

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MDISVSEGPP SLSPSLHQDS LWQMNLRSME SMESGPYPVR EGEPDCSYYI RTSLCRFGST  60
CRFNHPPNRK LALAAASING EYPERIGQLE CQYYLKTGTC KFGATCKFHH PRNKAGIAGR  120
VTLNVLGYPL RPNENECTYY MRTAQCKFGS TCKFHHPEPS NMMVSSRGST VYPPGPSPTT  180
PGQMPYPLSR ASFISGARWQ GSSSYAPLPM LQGVVSFPGF TYNGQLGSVS SAEGQQQTAG  240
NNQVYGSSRS SDKPTMGSEG MNSSYRASSL PVGYYALQGE NVFPERVGQP DCQFYMKTGD  300
CKFGAVCRFH HPRERLLPPP DCLLSPIGLP LRPGEPMCIF YSRYGICKFG PSCKFDHPMR  360
VFTYNISASS STDDPSVRRL LGSSSGTGAL TLTSEGIVEA TSTTPRRLSL SETRKMPPGD  420
NNFEREG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-170	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT01677