PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01685

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 27236.2 Da PI: 10.0846

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01685	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+s+ OIT01685 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP
2	K-box	75.2	1.8e-25	77	170	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ +++ + +q+e++ L+++++ Lq+++R+l+Ge+L L +k+L +Le+qLe sl+ iR kK+++l+++i+el +k ++++en +L kk+ OIT01685 77 QQLHNPASELKLWQREAEILRQQLHDLQENHRQLMGEELCGLGVKHLTNLENQLEMSLRGIRMKKEQILKDEIQELTQKGSMIHQENLELYKKV 170 444467888999*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFSNT 60 SMKSVIERYN KTKDERQQLH NPASELKLWQ REAEILRQQL HDLQENHRQL MGEELCGLGV 120 KHLTNLENQL EMSLRGIRMK KEQILKDEIQ ELTQKGSMIH QENLELYKKV NLIRQENAEL 180 YKKVYGTRNA NTVNGNTNSP YRFTVSREVH APIHLQLSQP EPHNFEMPAG VSNSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-107	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT01685