PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01725
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 249aa    MW: 28601.8 Da    PI: 7.7302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01725genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed +l+ +v ++G  +W+  ++  g+ R++k+c++rw++yl
         OIT01725 14 KGTWTPDEDRKLAAYVSKYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding53.55.3e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEde++ +++++ G++ W+ Ia++++ gR+++++k++w++
         OIT01725  67 RGSYTKEEDEIIMKLHAEIGNK-WSVIAAHLP-GRSDNDIKNHWHT 110
                      8999******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MARTRCYDKS GLKKGTWTPD EDRKLAAYVS KYGCWNWRQL PKFAGLARCG KSCRLRWLNY  60
LQPNIKRGSY TKEEDEIIMK LHAEIGNKWS VIAAHLPGRS DNDIKNHWHT SLKKRSTQEY  120
STSTDSKKGS SNNNYQSSSR KKRRENETQV NANEKINESF QLSPMQSCST EVSSCATIDQ  180
NVESIHGERE VFQEEIFEVS SGSFWTEPFL VDSFSTASDC FVPSFDDHGV FVSPFSPIMS  240
YDELLCSYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-55MYB family protein