PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01792

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 421aa MW: 45741.3 Da PI: 6.7005

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01792	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.2	2.6e-33	29	151	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ssssasecea 75 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el ++ + OIT01792 29 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQAAIDELEELppwkpttgpianfdqekkeqkenfgtqqN--------- 120 89*************************************************************99888765555544443333333333330......... PP TCP 76 esssssasnsssg.............................k 89 + + OIT01792 121 ------------DvnvniggssskramimlgnesearvlhqtN 151 ............1233344333233333333332222222220 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGTSSRFGLR NTGGEIVEVQ GGHIIRSIGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AQAAIDELEE LPPWKPTTGP IANFDQEKKE QKENFGTQQN 120 DVNVNIGGSS SKRAMIMLGN ESEARVLHQT NSGNSSGDNA NASFLPQSLD SDIIADTIKS 180 FFPVGGSNES TSSSAMQFQS FQEHNLLART SSHSQDLRLS LQSFQDPILL HQQQAQHHNN 240 PRNHTEEEQT HFQASNFFNG STPHGFDASG WSVSEHQQQP VEQRLAAARA GGDSTGISFC 300 GGAVAGAAGG YLFNSPPAPP LLQQLFGQNQ FFSQRGPLQS SYSPSIRAWI DPSAIAIATA 360 DPIHHHQAVL PMYSTSISGI GFASELGGFS GFRIPARIQG EIEEHDGISD KPSSASSDSR 420 H

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGTSSRFGLR NTGGEIVEVQ GGHIIRSIGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AQAAIDELEE LPPWKPTTGP IANFDQEKKE QKENFGTQQN  120
DVNVNIGGSS SKRAMIMLGN ESEARVLHQT NSGNSSGDNA NASFLPQSLD SDIIADTIKS  180
FFPVGGSNES TSSSAMQFQS FQEHNLLART SSHSQDLRLS LQSFQDPILL HQQQAQHHNN  240
PRNHTEEEQT HFQASNFFNG STPHGFDASG WSVSEHQQQP VEQRLAAARA GGDSTGISFC  300
GGAVAGAAGG YLFNSPPAPP LLQQLFGQNQ FFSQRGPLQS SYSPSIRAWI DPSAIAIATA  360
DPIHHHQAVL PMYSTSISGI GFASELGGFS GFRIPARIQG EIEEHDGISD KPSSASSDSR  420
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-84	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT01792