PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01880

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 241aa MW: 27341.9 Da PI: 4.5773

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01880	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.7	8.4e-15	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri ++s r+ + kR + ++KKAeE S+LCd+eva+iifs+ OIT01880 10 RICSESVRNSILKKRAASLFKKAEEFSILCDVEVAIIIFSE 50 677888899999***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MARKKLRHTR ICSESVRNSI LKKRAASLFK KAEEFSILCD VEVAIIIFSE GEIQPIAYPS 60 IGQAKEILMR YLSFSEAERF KKLVKHETYL LEKVNEQEEK ISKVEKMNEG KEMDVLFNQL 120 VEGKNINELD ARQLKGLLKL SAAKMAKLNE RKKQVIQPSE SPYRPSDFEP VSENVANQIS 180 DLQDFAPATN LMEDLINDPW FVENMAANQN EFGTDEFGTE PAPEEGNDNN AGDDGNPDDL 240 N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	4e-18	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT01880