PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01896

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 425aa MW: 49397.3 Da PI: 6.1445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01896	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	188	234	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+t+ gR +kqc++rw+++l OIT01896 188 KGQWTIEEDRLLIHLVEKFGVRKWSQIAQTLK-GRIGKQCRERWHNHL 234 799**************************9.***********97 PP
2	Myb_DNA-binding	58.2	1.8e-18	242	282	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ OIT01896 242 LWTEEEDKILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 282 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MELDKQDLSF HPIFVPNNNR LKPELDDDFC INSKDYYLQD FQHLDLNYTF NNTGNFMIDT 60 NGYDPFDPFT NEDNFSSLGD FNFSYELKPF DQENGESGNT IKENTMDVNY TYNESCFNSL 120 SCEDVKPLNF VVPDESSSCV TNGSNCKLEI GELRKNRKVK RNDQSSLLSS SSTKKLGRGR 180 NKKSKSAKGQ WTIEEDRLLI HLVEKFGVRK WSQIAQTLKG RIGKQCRERW HNHLRPDIKK 240 DLWTEEEDKI LIEAHAEVGN KWAEIAKRLP GRTENSIKNH WNATKRRQFS RRKCRTKWPK 300 PSSLLQNYIK SLNLEKGNSK KYSQTSNATN STAKVETIEF CQGNIDQVRE YCDFSEVPEF 360 ALDDKSFEEN RMNSFMEDIH VGPPSIMEKC MGLEIIPYEL PTFMQGDQVN NKEIDLMEMI 420 SRVNP

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MELDKQDLSF HPIFVPNNNR LKPELDDDFC INSKDYYLQD FQHLDLNYTF NNTGNFMIDT  60
NGYDPFDPFT NEDNFSSLGD FNFSYELKPF DQENGESGNT IKENTMDVNY TYNESCFNSL  120
SCEDVKPLNF VVPDESSSCV TNGSNCKLEI GELRKNRKVK RNDQSSLLSS SSTKKLGRGR  180
NKKSKSAKGQ WTIEEDRLLI HLVEKFGVRK WSQIAQTLKG RIGKQCRERW HNHLRPDIKK  240
DLWTEEEDKI LIEAHAEVGN KWAEIAKRLP GRTENSIKNH WNATKRRQFS RRKCRTKWPK  300
PSSLLQNYIK SLNLEKGNSK KYSQTSNATN STAKVETIEF CQGNIDQVRE YCDFSEVPEF  360
ALDDKSFEEN RMNSFMEDIH VGPPSIMEKC MGLEIIPYEL PTFMQGDQVN NKEIDLMEMI  420
SRVNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT01896