PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01909
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20924.4 Da    PI: 5.8663
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01909genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.9e-121660145
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              +rien   r++tfskRr g+ KKA+ +   C++++ + +fs+ g+
  OIT01909 16 ERIENPEDRYTTFSKRRSGLYKKASNVVEECGVDIGIALFSPAGN 60
              69****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MDKKKKTEGR QSIPLERIEN PEDRYTTFSK RRSGLYKKAS NVVEECGVDI GIALFSPAGN  60
PFSFFHPTPN IFIDHVENPN IELSESTKLV AAYTRNNVNQ MNNRINDIEI IEEAAKSKML  120
LLEQLNKTRQ MDSQQFKADD ITKYEAWLKS VVFGLANRLK QLENGASSSS QAPPDNADNS  180
PSASNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-21M-type_MADS family protein