PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01990
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 582aa    MW: 64847.4 Da    PI: 6.3691
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01990genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.91.8e-1272125811373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA+a+++++l   + l+++ +  +s +gdpmqRl ay++e+L ar   s++++y++l+++e +     + l+++++++e++P+lkf++++aN a
  OIT01990 212 LKQLLIACARALAENNLDDFEVLVTKARGAVSITGDPMQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GNDLLSYMHILYEICPYLKFGYMAANGA 309
               689***************************************************9**************9...99************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I ea  +e+ vHiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l ++++rL+ + e++++ +efn+ v     +++  +L+v+pgE
  OIT01990 310 IAEACRNENYVHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQyaRGDGLAAVEKRLSAISEKFNIAVEFNA-VPVFAPEVTKAMLDVRPGE 409
               *************************************************999999**************************.688889999********** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               a+aVn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n+++F+ rfleal+yy a+f+s++++l+r+ +eri+vE+++l+r+ivnv+ace
  OIT01990 410 AVAVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTAPFFPRFLEALDYYHAMFESIDVTLARDRKERINVEQHCLARDIVNVIACE 510
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               g+er+erhe l+kW++r+++aGF+++pls+++++ +k l+r+++ + y++ e++g+++lgWk+r+L+s+SaW
  OIT01990 511 GKERVERHELLGKWKSRFMMAGFRQYPLSSYVNSVIKDLMRRYS-EHYMLVEKDGAMLLGWKERNLISASAW 581
               ********************************************.55************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MDAHHFYDYG VTGSDLSYSS YPTISSLPNR PSGTSKFDSE NSPISPLANY LDSETFTTLS  60
DCQEQHSSTE NLSGASSSSN SSLDYNHYFH RPSPSPDCLP EGLLVFSGGN AVLQNAVHTQ  120
NMQRALLQLE SALMGPDEEV TKSSPSYGRN KAAQTSSQRS RAWTNKAKVL HPIETQPSQV  180
SMFTKSGNGI LRHERDKVLD DLPVHGVPSS NLKQLLIACA RALAENNLDD FEVLVTKARG  240
AVSITGDPMQ RLGAYIVEGL VARKELSGTT IYRSLRCKEP AGNDLLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRNENYV HIIDFQIAQG TQWMTLLQAL AARPGGAPYV RITGIDDPVS  360
QYARGDGLAA VEKRLSAISE KFNIAVEFNA VPVFAPEVTK AMLDVRPGEA VAVNFPLQLH  420
HTPDESVDVN NPRDELIRMI KSLCPKIVTL VEQESNTNTA PFFPRFLEAL DYYHAMFESI  480
DVTLARDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKSRFMM AGFRQYPLSS  540
YVNSVIKDLM RRYSEHYMLV EKDGAMLLGW KERNLISASA WY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-176GRAS family protein