PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02065

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 252aa MW: 29512 Da PI: 6.9288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02065	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+ +v+++G ++W+ a+ g++Rt+k+c++rw++yl OIT02065 8 KGPWSEQEDLQLAFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWLNYL 55 79********************************************97 PP
2	Myb_DNA-binding	56.1	8.4e-18	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ OIT02065 61 RGKMTPQEERLILELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MAQEEARKGP WSEQEDLQLA FYVNLFGDRR WDFLAKVSGL KRTGKSCRLR WLNYLHPGLK 60 RGKMTPQEER LILELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QDDRKNKASI 120 SPSSSFSNCS SYFSSNSPDV DFMPITENNE RNFYDTGGLL GVHEQSSLQN AGKKEVGDQE 180 KGKSVKVYSM DEIWNDIELL SEENETKNKP ILPSTMWEYC TDSTLWMTDE EETKMFPQFY 240 CLDNQDNTFF TG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	7e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT02065