PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02268
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 372aa    MW: 42090.3 Da    PI: 8.2231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02268genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-06136159123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               y+C+ Cg++F ++ +L++H++  H
  OIT02268 136 YPCTLCGEVFQSPIHLEQHQSIkH 159
               99******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MATVFRPIFS PFLSVIFLLL HLGCFIFSSA SHNQPSKKRK LPSDHHSKNK ATKVISSSWS  60
YIKRIFSSKP DPIQKITTSP THHNPSIQSP CSSTRSLHKP IFPISSDDPI TRSVYPVPES  120
DICADQLFFP LRNDIYPCTL CGEVFQSPIH LEQHQSIKHA VSELIDGDSG KNIVRIIFKT  180
GWPEKKNNPI IHQILKIHNS KRILTRFEDY REHVKFKASR NVVVKRDERC IADGNELLRF  240
HCTTFMCELG QNGNSSICNQ QYCSVCGIIK SGFSNKMDGI SVQPTSWRAH AAVPEEIEEE  300
FGFMNVKRAM LVCRVIAGRI GCDPDLADKE DPGFDSLVGR ENGFQSRLDE EDELLVFNPR  360
AVLPCFVIVY TV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-107C2H2 family protein