PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02312

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 999aa MW: 111201 Da PI: 6.0681

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02312	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ OIT02312 143 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 220 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MEASVGDRYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV 60 ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIVVD ENDSGGTLSL KLGGQAEPVA 120 EKRTKLAAAA APPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV 180 MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQASGYSLM 240 SLLKMLSNMH SNGTNHTEDQ DLLAHLLRSI AGQGSLNGDK SLSGLLQESS NLLNNRSILR 300 NPELASLISN CSQAPPRAKE HQFTNSAAEM PQKRLDAHDV RLEDARTASS QSPGILFPPI 360 QSNSQAYAQG RGSTTGRSKL IDFDLNDVYV DSDDNIEDID RSPVQCPSWL QQDSHQSSPP 420 QTSGNSDSAS AQSPSSSSGD TQTRTDRIVF KLFGKDPSDF PFVVRAQILD WLSRSPTEIE 480 SYIRPGCVVL TVYLRLPESA WEELCYDLNS SLSRLLDVHG DDSFWTKGWI YISVQNQIAF 540 VCDGQVLLDM SLPSGSNEHS TILSVRPIAV PVSERAQFLV KGYNLSKPST RLLCALESNY 600 LVPEANNEVE QHVDGIDNDD KLQSLNFTCS VPAVTGRGFI EVEDQGLSNS FFPFIVAEED 660 VCSEIRMLES ELDLTSANYV KGQINNMEAR NQAMDFIHEL GWLLHRNNLK ARLEHFGPDP 720 VLYPLKRFKW LIDFCVDHEW CAVVKKLLNV LLDGTVGAGD SSFLKFALTE MGLLHRAVRR 780 NSRPLVELLL TYSPEKVADE LSSEYQSLVE IDGEFLFRPD CVGPAGLTPL HVAAGIDGSE 840 EVLDALTDDP GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKATSGHIVV 900 DIPIVPSIEN SNQKEEEFAT NSLEISMTER RPISRPCGLC HKKLAYGSRS RSLLYRPAMF 960 SMVAMAAVCV CVALLFRGSP EVLYIFRPFR WEMVDFGTS

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MEASVGDRYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV  60
ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIVVD ENDSGGTLSL KLGGQAEPVA  120
EKRTKLAAAA APPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV  180
MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQASGYSLM  240
SLLKMLSNMH SNGTNHTEDQ DLLAHLLRSI AGQGSLNGDK SLSGLLQESS NLLNNRSILR  300
NPELASLISN CSQAPPRAKE HQFTNSAAEM PQKRLDAHDV RLEDARTASS QSPGILFPPI  360
QSNSQAYAQG RGSTTGRSKL IDFDLNDVYV DSDDNIEDID RSPVQCPSWL QQDSHQSSPP  420
QTSGNSDSAS AQSPSSSSGD TQTRTDRIVF KLFGKDPSDF PFVVRAQILD WLSRSPTEIE  480
SYIRPGCVVL TVYLRLPESA WEELCYDLNS SLSRLLDVHG DDSFWTKGWI YISVQNQIAF  540
VCDGQVLLDM SLPSGSNEHS TILSVRPIAV PVSERAQFLV KGYNLSKPST RLLCALESNY  600
LVPEANNEVE QHVDGIDNDD KLQSLNFTCS VPAVTGRGFI EVEDQGLSNS FFPFIVAEED  660
VCSEIRMLES ELDLTSANYV KGQINNMEAR NQAMDFIHEL GWLLHRNNLK ARLEHFGPDP  720
VLYPLKRFKW LIDFCVDHEW CAVVKKLLNV LLDGTVGAGD SSFLKFALTE MGLLHRAVRR  780
NSRPLVELLL TYSPEKVADE LSSEYQSLVE IDGEFLFRPD CVGPAGLTPL HVAAGIDGSE  840
EVLDALTDDP GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKATSGHIVV  900
DIPIVPSIEN SNQKEEEFAT NSLEISMTER RPISRPCGLC HKKLAYGSRS RSLLYRPAMF  960
SMVAMAAVCV CVALLFRGSP EVLYIFRPFR WEMVDFGTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT02312