PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02649
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26472.2 Da    PI: 9.9137
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02649genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-30959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krien++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fss+g++yeys+
  OIT02649  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSSRGRVYEYSN 59
              79***********************************************95 PP
2K-box101.41.2e-33791738100
     K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               +  ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le+++++iRskK+e++l+++e+lqk+e +l++en  Lr+k++e
  OIT02649  79 ActTQELNAQFYQQESKKLRQQIQMIQNSNRHLVGEGLSSLNVRELKQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENAFLRSKIAE 173
               24478899************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSS RGRVYEYSNN  60
NIKATIDRYK KATSETSNAC TTQELNAQFY QQESKKLRQQ IQMIQNSNRH LVGEGLSSLN  120
VRELKQLENR LERGITRIRS KKHEMILAET ENLQKREIQL EQENAFLRSK IAENERLQEL  180
SMMPAGGQEY SAIQQYLARN MLQLNMMEGG VPTSYHQLPT DKKSLELQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-101MIKC_MADS family protein