PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02680
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 154aa    MW: 17404.8 Da    PI: 7.8189
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02680genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.5e-3851041100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk lrr+C++dC++ pyfp ++p++f +vhk++Gasnv k+l++++e++r d+++sl+yeA +r+++PvyG+vg i+ l+q++ +l+ +la++++e
  OIT02680   5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHKIYGASNVGKMLQQVEEHQRADVAHSLYYEAYCRTKNPVYGCVGNISILHQEIYHLEWQLAKVEAE 104
               6***********************************************************************************9999999999998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHKI YGASNVGKML QQVEEHQRAD  60
VAHSLYYEAY CRTKNPVYGC VGNISILHQE IYHLEWQLAK VEAEISLLKA QAQTEAQLAQ  120
GQQVELSPAN MLADKNGVYS SLLSSFDLST PSLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-46LBD family protein