PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02800
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 339aa    MW: 38415.2 Da    PI: 7.7213
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02800genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1554113155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  OIT02800  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEtqsKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 113
               57*******************999977877557*************************98 PP
2AP249.98.1e-16156207155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  OIT02800 156 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEHRG 207
               79****99**********99966...3.6***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MAKTSKANQK NTSYSNNSDK NNSNSGGSGD HAISKGKRKR KAVVPRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE TQSKKGRQVY LGAYDDEEAA AHAYDLAALK YWGQDTILNF  120
PLSTYEKELK EMEDQSREEY IGSLRRKSSG FSRGVSRYRG VARHHHNGRW EARIGRVFGN  180
KYLYLGTYAT QEEAAMAYDM AAIEHRGPNA VTNFDLSRYI KCNPQPKPNP NSTDLNPIPN  240
TKEEINFSFI NQQHEQQQSS NSAGTTVPPP HPVGGTAASS AVDFPETPPE PDRPRRSFPD  300
DIQTYFDCQD SSSFVEEHDI IFGDLDSFLL PMFAYELNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-111AP2 family protein