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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT02816 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | LBD | ||||||||
| Protein Properties | Length: 84aa MW: 9485.73 Da PI: 8.4823 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 104.3 | 1e-32 | 14 | 84 | 1 | 71 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71
+CaaCk+lrrkC+++ v+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rd
OIT02816 14 PCAACKFLRRKCQPEYVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRD 84
7*******************************************************************998 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 84 aa Download sequence |
MASSSSSSLS SYSPCAACKF LRRKCQPEYV FAPYFPPDQP QKFANVHKIF GASNVTKLLN 60 ELQPHQREDA VNSLAYEADM RLRD |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65620.3 | 2e-46 | LBD family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT02816 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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