PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02861
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 343aa    MW: 38229.7 Da    PI: 8.825
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02861genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.3e-381222814136
       TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssasec.eaess 78 
                kdrhski T++g+RdRR+Rls++ a++fF Lqd+LGfdk+skt+eWLl++++ +i el++                          ss+s+se+ +  ++
  OIT02861 122 NKDRHSKINTARGLRDRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLNKSESEIEELAKGnkggealpkqscstttgigaistaiSSISESEViSGTDE 222
               69***********************************************************99***99999999999999888766655555666544444 PP

       TCP  79 sssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
               sss   +++ + ak   k+k ++++ a +  l   esr++ar rarert+ k+++ +++
  OIT02861 223 SSSITDKKKLETAKGPSKKKAKTARRAVFDPLITrESRNQARIRARERTKIKKNLGQSK 281
               44444333335666666666666666666777777***************999887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MYPPSNSCNY SPIFNITSPC MQYGDELFFQ YYHDHFLQEQ QVPFIEDQSV DNLADSTETV  60
TNKETVINTD SVKVLYNTET VTNNQCWGGN EGVEGRDKKR GEMSSTTSII RGRIQKNKRC  120
SNKDRHSKIN TARGLRDRRM RLSLDAARKF FSLQDMLGFD KASKTVEWLL NKSESEIEEL  180
AKGNKGGEAL PKQSCSTTTG IGAISTAISS ISESEVISGT DESSSITDKK KLETAKGPSK  240
KKAKTARRAV FDPLITRESR NQARIRARER TKIKKNLGQS KENSADDCNL VVSHGIGSPF  300
SIFNYQQNAV GISHDQQFTD FQFCGKHVGS LGQGILGAET FFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.17e-24TCP family protein