PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02869
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 243aa    MW: 27374.9 Da    PI: 5.09
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02869genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278e-0986131452
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
               ++  rE+ RRdr+N++f eL ++l +    + +K +K++iL  A + + 
  OIT02869  86 SKASREKLRRDRLNERFLELSSVLDPG---RPPKTEKVAILSDAQKMLI 131
               5778**********************8...88**********9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEIDSSGNPN WLFDYELMTD ITSAASVAVA DFQSPATIDF SWPAQTIYAS SNLIAETDYT  60
FDDSEVSKEA SSRKRSRIEC CNSPRSKASR EKLRRDRLNE RFLELSSVLD PGRPPKTEKV  120
AILSDAQKML IELRAETQKL KDSNEELQEK IKELKAEKNE LRDEKQRLKE EKENLEQQVK  180
NLASKPGFLS HPSAMGAAFT AQGQVAGNKM MPFIGYPSVA MWQFMQPAVV DTSQDHVLRP  240
PVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-87bHLH family protein