PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02958
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 542aa    MW: 62072 Da    PI: 5.4251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02958genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.57.3e-881695402374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshltaN 99 
               +e Ll+ Ae v ++++ +a++lL +  + +s++g+p+qRla yf +AL+ r++  ++ +++k + +++ +  +    +  +++ + ++  P+ ++++++  
  OIT02958 169 IEYLLASAEKVGQKQFDRARKLLHECDKSCSNKGNPIQRLAYYFSRALHDRINWeTGIGTSKGIGMKRLAYIEdsLMSLNSSMIAAHQSVPLNQVTQFAGV 269
               7889************************************************98677888888866665532222333334444499************** PP

      GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
               qaI + v+++e+vHiiD++i++G+QW+ L+qaLa+ +  ++  +l++T++     + ++++e t erL +fA++l++pf+fn+++++++ +l+ +++++++
  OIT02958 270 QAIIDHVAESEKVHIIDLEIGNGMQWIILMQALATNQceSSFKHLKLTALCT---KFRHKIEDTCERLMSFAKSLNLPFSFNIVMVEDIMELKQDDFELDN 367
               **********************************998767778*******99...46899***************************************** PP

      GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
               +E++a+  ++ l+r+l+++ +l+    ++++++k+++P+ ++v+e ea+hns+ F++rf+eal +y a+fd+le  + +++++r+  E e l++ i+ +va
  OIT02958 368 EEVVAIFAQYILMRMLARPDKLD----ALMRVIKGINPRAMIVIEVEANHNSPVFVDRFVEALFFYGAFFDALEDCMKHDEKNRTATESEHLNQGIRIIVA 464
               ****************6665555....5************************************************************************* PP

      GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +eg+er+ rh +   Wr+ + + G+++v+ls++   qa+l+l++++ +   ++e ++++l++gWk+ pL s+SaW+
  OIT02958 465 AEGEERTIRHVKIDVWRMFFARYGMEEVELSKSSLYQANLVLKNFAcGSSCTLEMNQNCLLIGWKGTPLSSLSAWT 540
               **********************************************9999*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MDLDLFSSSL GKDQLVEEEE QQQQQDELQL LVDFVSFDDW DFDVVPLQHE SNVEKTVQTK  60
KSYEITESKK SMETPLPSAL KILKDYDSRF RRSRRSNTKK NIISMQNNKS ECIKANGCKL  120
STDEILRLGA EKFIQSFTIS REEAYMFSHP FASSFLGLSE DDTRNMTLIE YLLASAEKVG  180
QKQFDRARKL LHECDKSCSN KGNPIQRLAY YFSRALHDRI NWETGIGTSK GIGMKRLAYI  240
EDSLMSLNSS MIAAHQSVPL NQVTQFAGVQ AIIDHVAESE KVHIIDLEIG NGMQWIILMQ  300
ALATNQCESS FKHLKLTALC TKFRHKIEDT CERLMSFAKS LNLPFSFNIV MVEDIMELKQ  360
DDFELDNEEV VAIFAQYILM RMLARPDKLD ALMRVIKGIN PRAMIVIEVE ANHNSPVFVD  420
RFVEALFFYG AFFDALEDCM KHDEKNRTAT ESEHLNQGIR IIVAAEGEER TIRHVKIDVW  480
RMFFARYGME EVELSKSSLY QANLVLKNFA CGSSCTLEMN QNCLLIGWKG TPLSSLSAWT  540
FS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-57GRAS family protein