PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03094
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 236aa    MW: 27108.3 Da    PI: 8.4807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03094genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  ++++G ++W++ +r  g+ R++k+c++rw +yl
         OIT03094 14 KGPWTAEEDQILISFIQRYGHENWRALPRQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.75.6e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l
         OIT03094  67 RGNFSKEEEETIIKLHQVLGNR-WSAIASRLP-GRTDNEVKNFWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MVRAPCCERM GLKKGPWTAE EDQILISFIQ RYGHENWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEETIIK LHQVLGNRWS AIASRLPGRT DNEVKNFWHT HLKKRSEHNY  120
LLPSTTTTKR SSHDMMIPKR TTNVSQKINH HIIASNYQAS QNIVTYHPTC DVEDLQENNS  180
SSYSESTQSN KEESMQSING ENIGTESANG HGDTSFSNDM VFWYNIFMGA GTISES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128135TKRSSHDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-75MYB family protein