PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03182

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 253aa MW: 28970.4 Da PI: 9.5452

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03182	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.4e-11	81	129	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++ +++Lr l+P+ +K s ++ Le+ v+YIk++ OIT03182 81 VRRDVERQRRRDMARLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYIKDM 129 56789*******************77...9****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MDDYDQFDYA QVEHLLHLLS SSPPPLPPPL TTNSSVPLQT QSCNLVNTPV PKRKAAIANI 60 DQDTGKGKPP KEKENTEKKV VRRDVERQRR RDMARLYQRL RLLIPSKYLM GKRSISDHLE 120 EIVDYIKDMR KNIEELESKR ERLKEMRNIC SSDHNSHLDA PSSSMKIDDN QDRIIVKKCE 180 QGVEISVISN LGGGLALSKV LRVLMEERLL VISCVSSKIN QRSLHIIQSE VNSRGDIDLG 240 RLQFKLMSLS YKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	5e-16	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT03182