PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03184

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 211aa MW: 22712.1 Da PI: 3.9839

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03184	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	31	3.3e-10	150	202	4	56
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 +L++cAea+++++l+la+al++ ++ la ++ ++++++ yf L ++++++ OIT03184 150 TLMACAEAIQQNNLNLADALVSDIKRLAVQQSGAVKKVVYYFEDTLDRTINGM 202 79************************************************984 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MSYRSEMSMD TTTEDGESFI SNTDAIINGT SDISALAESL ISGPNIPNSS WTSADDIQQQ 60 ISTAGGGADD DMMIVSSGAS SMLSNTNKQS EIMIFNVDFR AFAVCNNSDK IEEKGSAESS 120 KRLESRFGLG SNIGGAVNEE TSFRFVNIYT LMACAEAIQQ NNLNLADALV SDIKRLAVQQ 180 SGAVKKVVYY FEDTLDRTIN GMNAPYIVES S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-15	GRAS family protein

Link Out ? help Back to Top
Ensembl	OIT03184