PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03365

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 222aa MW: 24234.1 Da PI: 8.9662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03365	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ CgksF + L H +H OIT03365 83 YNCSVCGKSFGSYQALGGHKASH 105 89********9999998888777 PP
2	zf-C2H2	13.9	0.00016	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ksF++ L H r+H OIT03365 139 HECSVCHKSFPTGQALGGHKRRH 161 78*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MALEALNSPR TPTPPSFQYE NTTLNYLESW TKGKIRSKRP RSIMEQQPTE EEYLAFCLLM 60 LAHSNGNSTT NSVTAPIISK NLYNCSVCGK SFGSYQALGG HKASHRKQLI NGDVNENSAT 120 TSIATAGATS ANGLSGRTHE CSVCHKSFPT GQALGGHKRR HYEGKVTSSD GVGSTTSQRG 180 FDLNIPPLPE FWPGFRSGED EVESPHPAKK SRQFPLTKLE LF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	1e-57	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT03365