PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03373

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 246aa MW: 27631 Da PI: 7.1649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03373	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	74	126	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ + ++ Lr+ lP ++K s ++ +A +YI +Lq OIT03373 74 KKVMHREIERQRRQEMATLYASLRQQLPLE--IIKGKRSTSDHIFEAANYIEHLQ 126 6899***********************7..4*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MDNFHSIFPL QQDVDDNNSH QLLYTNPCNF LYQQDLVTDF APLELDKNNQ KGNKAGKASA 60 ASLPVEKTSD DKQKKVMHRE IERQRRQEMA TLYASLRQQL PLEIIKGKRS TSDHIFEAAN 120 YIEHLQKNVR NLEDRREKLN KASNSSNRDY TISGSSSTTD SSSSTIVTVK QCLDGIEILV 180 NCGVESEGFR LSRVLQVLLQ QGLSIVNCSC TKTSTSLLHT IRTEVASQAG IDVHVIQQKL 240 SDISFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-26	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT03373