PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03525

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 1683aa MW: 184305 Da PI: 6.6526

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03525	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.6e-09	812	853	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + +G++ +++Ia+ + ++t +c+++++k OIT03525 812 PWTSEEREIFIDKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 853 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.2	1.1e-09	1030	1070	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ + ++r++ +R+++qck ++ OIT03525 1030 DWTDEEKSIFIQAVSAYGKD-FVMVSRCVR-TRSREQCKIFFS 1070 5***************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1683 aa Download sequence
MPSEPLPWDR KDFFKERRQH DRSELLRGGP RWREPPPRHH YGSSRWVPAD FRSTRGAPPG 60 HGKQGSWHMY PEESGHGFMP SRSNEKIVED ESCRQSRGDG GGKYGSRSSS RENRSFGGQR 120 DWRRGGGLSW EAAASPSGPV RQHDTATNDQ RPADVMVPHN SEHVNNTWDQ SHSRDQLNKS 180 GSANGTASTG QRFERGNSLG SIEWRPLKWA RSGSLSSRGS LSHSGSSKSM GVDSNETKPE 240 LQPGNSKALQ SPTGDATACV TSAAPSEETS SRKKPRLGWG EGLAKYEKKK VPEDSAAKVG 300 ACISGDSVEP GHPHPLNTAD KSPRVAVSVD CPSPTTPSSV ACSSSPGLED KQPVKAMNID 360 QDDGNLCGSP SIISQYHSEE FAFNLENFDL SQISNLNSSI NELLQSEDSS SVDSGFMRST 420 AVNKLLIWKN DISKVLEKTE VEIDSLENEL KTLISEPEYT QLVPSGSCSP RKECNSNSHE 480 DRGTTNIASR PAPLQVVIPE DVIGEEGTNI QEKEHTEVKV EDIDSPGSAT SKFVELPSEK 540 DIGAIKHVGG MLISDECKSL SNTVKVCSST EDKAKSRSSD VKVCSFSEDM ARDTLACGES 600 FQLTARCSRP VSDVSLNCGK DALYNLILAA NKDTAYRAFD VFKNLLPAGK CSFDFSSVSS 660 LQIDHAVKER FARRKQFKQF KEKIIALKFR VHQHLWKEDM RMLSARKFRA KSQKKFDFSL 720 RPVQIGHQKH RSTVRSRFST TVGNSSLVPS SEVLNFASRL LSDLRAKVYR NTLRMPALVL 780 DQKERTMSRF ISKNSLVEDP CAVEKERSVI NPWTSEEREI FIDKLATFGK DFRKIASFLD 840 HKTTADCIEF YYKNHKSDCF ERTKRKPDYS KQAKVCSANT YLVASSGKRW NREANSVSLD 900 ILGAASAIAA NVEDSIEIQQ KCTSKYSVRM VTEHKTSRHN ELERSNSLDV CHSERERVAA 960 DVLTGICGSL SSEAMSSCIT SSIDPAEGNQ EWKHQKVGSS TRLPLTPEVT QSVDDETCSD 1020 ESCGEMDPTD WTDEEKSIFI QAVSAYGKDF VMVSRCVRTR SREQCKIFFS KARKCLGLDN 1080 ILPGPGNLVR QDVNGGNDPD ACVTETELFC NEKSSLKLKE LSDLCVSAGI SKPDMTSSDD 1140 KDGAGELDSV DTELVSKNSV QVNCHVDKQR VEFDRHCEIQ IGACTENGRG DENMVTVSQE 1200 GGVQIDGDVS ENGPAGILCA NKVSGEHSGE EIKGVVPEHD LKNRKADSAE VSRSNFSLED 1260 TKSNMVSSGS NSHLAAVRGA ELCPLNGSQN TTLLESDSEC KPDVNYSGSN ISVLRKKMPR 1320 ASSTVYLSEL ELENVGDQQH DNATQSAEQP LPSTSRIAHI ESRQILGSYS LGESATKESG 1380 DGCSTSAALQ EIQKMGKNLR SDTSSTTGFF LQRCNGTNRE QTVGGSSSNV DKPCRNGDVK 1440 LFGQILSKPC PQANTSSNAQ QSDSSKEVCS NMSSASHSLD GNSATAKSER SNFLGSENHQ 1500 VRSFGFWDGN RIQTGFSSLP DSAILLAKYP AAFGNYAISS SKVEQQPPLH GVMKTATERS 1560 LNGVPVFPTR DISSNNGVAA ADYQVYRSLD VQPFTIEMKQ RQDAVFSEMQ RRNGFDVVSS 1620 MQQQARGVVV GRGGILVGGQ CTGVSDPVAA IKMHYAKAEQ FSGQATSIIR EDDYWLSKGD 1680 ISR

Sequence ? help Back to Top

Protein Sequence Length: 1683 aa Download sequence

MPSEPLPWDR KDFFKERRQH DRSELLRGGP RWREPPPRHH YGSSRWVPAD FRSTRGAPPG  60
HGKQGSWHMY PEESGHGFMP SRSNEKIVED ESCRQSRGDG GGKYGSRSSS RENRSFGGQR  120
DWRRGGGLSW EAAASPSGPV RQHDTATNDQ RPADVMVPHN SEHVNNTWDQ SHSRDQLNKS  180
GSANGTASTG QRFERGNSLG SIEWRPLKWA RSGSLSSRGS LSHSGSSKSM GVDSNETKPE  240
LQPGNSKALQ SPTGDATACV TSAAPSEETS SRKKPRLGWG EGLAKYEKKK VPEDSAAKVG  300
ACISGDSVEP GHPHPLNTAD KSPRVAVSVD CPSPTTPSSV ACSSSPGLED KQPVKAMNID  360
QDDGNLCGSP SIISQYHSEE FAFNLENFDL SQISNLNSSI NELLQSEDSS SVDSGFMRST  420
AVNKLLIWKN DISKVLEKTE VEIDSLENEL KTLISEPEYT QLVPSGSCSP RKECNSNSHE  480
DRGTTNIASR PAPLQVVIPE DVIGEEGTNI QEKEHTEVKV EDIDSPGSAT SKFVELPSEK  540
DIGAIKHVGG MLISDECKSL SNTVKVCSST EDKAKSRSSD VKVCSFSEDM ARDTLACGES  600
FQLTARCSRP VSDVSLNCGK DALYNLILAA NKDTAYRAFD VFKNLLPAGK CSFDFSSVSS  660
LQIDHAVKER FARRKQFKQF KEKIIALKFR VHQHLWKEDM RMLSARKFRA KSQKKFDFSL  720
RPVQIGHQKH RSTVRSRFST TVGNSSLVPS SEVLNFASRL LSDLRAKVYR NTLRMPALVL  780
DQKERTMSRF ISKNSLVEDP CAVEKERSVI NPWTSEEREI FIDKLATFGK DFRKIASFLD  840
HKTTADCIEF YYKNHKSDCF ERTKRKPDYS KQAKVCSANT YLVASSGKRW NREANSVSLD  900
ILGAASAIAA NVEDSIEIQQ KCTSKYSVRM VTEHKTSRHN ELERSNSLDV CHSERERVAA  960
DVLTGICGSL SSEAMSSCIT SSIDPAEGNQ EWKHQKVGSS TRLPLTPEVT QSVDDETCSD  1020
ESCGEMDPTD WTDEEKSIFI QAVSAYGKDF VMVSRCVRTR SREQCKIFFS KARKCLGLDN  1080
ILPGPGNLVR QDVNGGNDPD ACVTETELFC NEKSSLKLKE LSDLCVSAGI SKPDMTSSDD  1140
KDGAGELDSV DTELVSKNSV QVNCHVDKQR VEFDRHCEIQ IGACTENGRG DENMVTVSQE  1200
GGVQIDGDVS ENGPAGILCA NKVSGEHSGE EIKGVVPEHD LKNRKADSAE VSRSNFSLED  1260
TKSNMVSSGS NSHLAAVRGA ELCPLNGSQN TTLLESDSEC KPDVNYSGSN ISVLRKKMPR  1320
ASSTVYLSEL ELENVGDQQH DNATQSAEQP LPSTSRIAHI ESRQILGSYS LGESATKESG  1380
DGCSTSAALQ EIQKMGKNLR SDTSSTTGFF LQRCNGTNRE QTVGGSSSNV DKPCRNGDVK  1440
LFGQILSKPC PQANTSSNAQ QSDSSKEVCS NMSSASHSLD GNSATAKSER SNFLGSENHQ  1500
VRSFGFWDGN RIQTGFSSLP DSAILLAKYP AAFGNYAISS SKVEQQPPLH GVMKTATERS  1560
LNGVPVFPTR DISSNNGVAA ADYQVYRSLD VQPFTIEMKQ RQDAVFSEMQ RRNGFDVVSS  1620
MQQQARGVVV GRGGILVGGQ CTGVSDPVAA IKMHYAKAEQ FSGQATSIIR EDDYWLSKGD  1680
ISR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-153	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT03525