PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03584

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 230aa MW: 25398.8 Da PI: 10.1251

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03584	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H OIT03584 30 YSCSFCKREFRSAQALGGHMNVH 52 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MDEYSSQYSI WMKSKTIPLG AGFIWPPRCY SCSFCKREFR SAQALGGHMN VHRRDRARLK 60 QSLNPQNEAP SQSLSKPQRQ SPARNSKSAS TLSSAVFSQG NSKFSHLAYS PEIKELAAGQ 120 KIMSSSSSTK QDFNRYGDKK LKGAGKKFIL LDDDANSSSV GVSASKRQKS CMVSSLPMLH 180 EPCSSHEKYS FTTSDYKVGI RTSSMEDIDL ELRLAIGDPP AKQLVTLGLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	2e-22	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT03584