PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03597
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18567.9 Da    PI: 9.8866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03597genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-1222501442
              HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
               kR   ++K AeELS+LC++++a+i+fs+
  OIT03597 22 LKRTRSLFKQAEELSILCAIQIAIIVFSP 50
              69**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MASKKHKNSS EMSESEKKAL ILKRTRSLFK QAEELSILCA IQIAIIVFSP WETSPIYWPS  60
EAQATEIFKN YLKKPEVVRM KKLIKLETYL SDKEKAKEED IRKMEQKNEE MEMEFLLSEL  120
VKGKSMTELD VRQTKGLLKL VALKKAKLEE MKKQLAEQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.13e-13M-type_MADS family protein