PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03711
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 117aa    MW: 13721.2 Da    PI: 10.4287
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03711genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-3157107151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
               krie+ + rqvtfskRrngi+KKA+ELSvLCdaevaviifs++g+lye+ss
  OIT03711  57 KRIEDATSRQVTFSKRRNGIMKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 107
               79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
SSKIPFLGFF CFWVKFLMLH SFQACSRSCS VPKLNTNKLS QFLDILWKMV RGKVQMKRIE  60
DATSRQVTFS KRRNGIMKKA YELSVLCDAE VAVIIFSQKG RLYEFSSSRY VCFYFLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-32MIKC_MADS family protein